Package | Description |
---|---|
org.biojava.nbio.core.search.io | |
org.biojava.nbio.core.search.io.blast |
Constructor and Description |
---|
SearchIO(File f,
ResultFactory factory)
Build a SearchIO reader and specify a ResultFactory object to be used
for parsing
|
SearchIO(File f,
ResultFactory factory,
double maxEvalue)
Build a SearchIO reader, specify a ResultFactory object to be used for parsing
and filter hsp retrieved by a e-value threshold.
|
Modifier and Type | Class and Description |
---|---|
class |
BlastTabularParser
Designed by Paolo Pavan.
|
class |
BlastXMLParser
Re-designed by Paolo Pavan on the footprint of:
org.biojava.nbio.genome.query.BlastXMLQuery by Scooter Willis
|
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