Package | Description |
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org.biojava.nbio.core.sequence.io |
Modifier and Type | Class and Description |
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class |
GenericFastaHeaderFormat<S extends AbstractSequence<?>,C extends Compound>
We store the original header if the sequence is parsed from a fasta file and will use that exact
sequence if we write out the sequences to a fasta file.
|
Constructor and Description |
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FastaGeneWriter(OutputStream os,
Collection<GeneSequence> sequences,
FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat,
boolean showExonUppercase) |
FastaGeneWriter(OutputStream os,
Collection<GeneSequence> sequences,
FastaHeaderFormatInterface<GeneSequence,NucleotideCompound> headerFormat,
boolean showExonUppercase,
int lineLength) |
FastaWriter(OutputStream os,
Collection<S> sequences,
FastaHeaderFormatInterface<S,C> headerFormat)
Use default line length of 60
|
FastaWriter(OutputStream os,
Collection<S> sequences,
FastaHeaderFormatInterface<S,C> headerFormat,
int lineLength)
Set custom lineLength
|
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