Uses of Interface
org.biojava.nbio.structure.gui.util.color.ContinuousColorMapper

Packages that use ContinuousColorMapper

Package	Description
org.biojava.nbio.structure.gui	A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
org.biojava.nbio.structure.gui.util.color

Uses of ContinuousColorMapper in org.biojava.nbio.structure.gui

Fields in org.biojava.nbio.structure.gui with type parameters of type ContinuousColorMapper

Modifier and Type	Field and Description
protected Map<String,ContinuousColorMapper>	ScaleableMatrixPanel.gradients

Methods in org.biojava.nbio.structure.gui that return ContinuousColorMapper

Modifier and Type	Method and Description
ContinuousColorMapper	JMatrixPanel.getCellColor()
ContinuousColorMapper	ScaleableMatrixPanel.getCellColor()

Methods in org.biojava.nbio.structure.gui that return types with arguments of type ContinuousColorMapper

Modifier and Type	Method and Description
protected static Map<String,ContinuousColorMapper>	ScaleableMatrixPanel.createGradients()

Methods in org.biojava.nbio.structure.gui with parameters of type ContinuousColorMapper

Modifier and Type	Method and Description
void	JMatrixPanel.setCellColor(ContinuousColorMapper cellColor)
void	ScaleableMatrixPanel.setCellColor(ContinuousColorMapper cellColor)

Uses of ContinuousColorMapper in org.biojava.nbio.structure.gui.util.color

Classes in org.biojava.nbio.structure.gui.util.color that implement ContinuousColorMapper

Modifier and Type	Class and Description
class	ContinuousColorMapperTransform Maps colors by performing a transform of the input data and then passing the transformed value to a ContinuousColorMapper for rendering.
class	DefaultMatrixMapper Color Mapper which mimics the default coloring of JMatrixPanel pixels.
class	GradientMapper Maps a set of real values onto a gradient.
class	LogColorMapper Performs a log10 transform on input before passing the values off to another colorMapper.
class	SqrtColorMapper Performs a sqrt transform on input before passing the values off to another colorMapper.

Fields in org.biojava.nbio.structure.gui.util.color declared as ContinuousColorMapper

Modifier and Type	Field and Description
protected ContinuousColorMapper	ContinuousColorMapperTransform.mapper

Constructors in org.biojava.nbio.structure.gui.util.color with parameters of type ContinuousColorMapper

Constructor and Description
ContinuousColorMapperTransform(ContinuousColorMapper submapper) Creates a transform.
GradientPanel(ContinuousColorMapper mapper, double min, double max)
LogColorMapper(ContinuousColorMapper logspaceMapper) Creates a new LogColorMapper with base 10.
LogColorMapper(ContinuousColorMapper logspaceMapper, int base) If logspaceMapper maps values x1 to x2, this creates a mapper for values base^x1 to base^x2
SqrtColorMapper(ContinuousColorMapper sqrtspaceMapper) Creates a new SqrtColorMapper.