org.biojava.nbio.alignment
Classes
Alignments
FractionalIdentityInProfileScorer
FractionalIdentityScorer
FractionalSimilarityInProfileScorer
FractionalSimilarityScorer
GuideTree
NeedlemanWunsch
SimpleGapPenalty
SimpleProfileProfileAligner
SmithWaterman
StandardRescoreRefiner
SubstitutionMatrixScorer
Enums
Alignments.PairInProfileScorerType
Alignments.PairwiseSequenceAlignerType
Alignments.PairwiseSequenceScorerType
Alignments.ProfileProfileAlignerType
Alignments.RefinerType