Package | Description |
---|---|
org.biojava.nbio.structure |
Interfaces and classes for protein structure (PDB).
|
Modifier and Type | Field and Description |
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static GroupType |
HetatomImpl.type
The GroupType is HETATM
|
static GroupType |
AminoAcidImpl.type
this is an Amino acid.
|
static GroupType |
NucleotideImpl.type
this is a "nucleotide", a special occurance of a Hetatom.
|
Modifier and Type | Method and Description |
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static GroupType |
StructureTools.getPredominantGroupType(Chain c)
Get the predominant
GroupType for a given Chain, following these
rules: if the ratio of number of residues of a certain
GroupType to total non-water residues is above the threshold
0.95, then that GroupType is
returned if there is no GroupType that is above the
threshold then the GroupType with most members is chosen, logging
it |
GroupType |
Group.getType()
|
GroupType |
HetatomImpl.getType()
|
GroupType |
AminoAcidImpl.getType() |
GroupType |
NucleotideImpl.getType() |
static GroupType |
GroupType.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static GroupType[] |
GroupType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
List<Group> |
Chain.getAtomGroups(GroupType type)
|
List<Group> |
ChainImpl.getAtomGroups(GroupType type)
|
List<Group> |
Chain.getSeqResGroups(GroupType type)
|
List<Group> |
ChainImpl.getSeqResGroups(GroupType type)
|
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