001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 */ 021package org.biojava.nbio.core.search.io.blast; 022 023import org.biojava.nbio.core.search.io.Hit; 024import org.biojava.nbio.core.search.io.Result; 025import java.util.HashMap; 026import java.util.List; 027import org.biojava.nbio.core.sequence.template.Sequence; 028 029/** 030 * This class models a Blast/Blast plus result. 031 * You will find one of this for every query sequence specified in the run. 032 * 033 * Designed by Paolo Pavan. 034 * You may want to find my contacts on Github and LinkedIn for code info 035 * or discuss major changes. 036 * https://github.com/paolopavan 037 * 038 * @author Paolo Pavan 039 * 040 */ 041public class BlastResult extends Result{ 042 public BlastResult(String program, String version, String reference, String dbFile, HashMap<String, String> programSpecificParameters, int iterationNumber, String queryID, String queryDef, int queryLength, List<Hit> hits, Sequence querySequence) { 043 super(program, version, reference, dbFile, programSpecificParameters, iterationNumber, queryID, queryDef, queryLength, hits, querySequence); 044 } 045 046} 047 048 049