001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 */ 021package org.biojava.nbio.phylo; 022 023/** 024 * The TreeConstructorType specifies the aligorithm used to construct the tree 025 * (clustering algorithm). Only support for the NJ algorithm (from forester) is 026 * currently implemented. 027 * 028 * @author Aleix Lafita 029 * @since 4.1.1 030 * 031 */ 032public enum TreeConstructorType { 033 034 /** Neighbor Joining Algorithm */ 035 NJ, 036 037 /** Unweighted Pair-Group Method with Arithmetic mean */ 038 UPGMA, 039 040 /** What does this stand for? (Aleix: Nov 2015) */ 041 AV; 042}