001package org.biojava.nbio.structure.io.mmcif.model;
002
003/**
004 * A class containing the _atom_sites data. Equivalent to the SCALE records in PDB files.
005 * 
006 * 
007 * @author Jose Duarte
008 *
009 */
010public class AtomSites extends AbstractBean {
011        
012        String entry_id;
013        
014        // to my knowledge this field is not used - JD 2016-11-22
015        String Cartn_transform_axes;
016        
017        @CIFLabel(label="fract_transf_matrix[1][1]")
018        String fract_transf_matrix11;
019
020        @CIFLabel(label="fract_transf_matrix[1][2]")
021        String fract_transf_matrix12;
022
023        @CIFLabel(label="fract_transf_matrix[1][3]")
024        String fract_transf_matrix13;
025
026
027        @CIFLabel(label="fract_transf_matrix[2][1]")
028        String fract_transf_matrix21;
029
030        @CIFLabel(label="fract_transf_matrix[2][2]")
031        String fract_transf_matrix22;
032
033        @CIFLabel(label="fract_transf_matrix[2][3]")
034        String fract_transf_matrix23;
035        
036
037        @CIFLabel(label="fract_transf_matrix[3][1]")
038        String fract_transf_matrix31;
039
040        @CIFLabel(label="fract_transf_matrix[3][2]")
041        String fract_transf_matrix32;
042
043        @CIFLabel(label="fract_transf_matrix[3][3]")
044        String fract_transf_matrix33;
045
046
047        @CIFLabel(label="fract_transf_vector[1]")
048        String fract_transf_vector1;
049        
050        @CIFLabel(label="fract_transf_vector[2]")
051        String fract_transf_vector2;
052
053        @CIFLabel(label="fract_transf_vector[3]")
054        String fract_transf_vector3;
055        
056        // these fields are unusual but appear in some entries like 5e5j - JD 2016-11-22
057        @CIFLabel(label="Cartn_transf_matrix[1][1]")
058        String Cartn_transf_matrix11;
059
060        @CIFLabel(label="Cartn_transf_matrix[1][2]")
061        String Cartn_transf_matrix12;
062
063        @CIFLabel(label="Cartn_transf_matrix[1][3]")
064        String Cartn_transf_matrix13;
065
066        @CIFLabel(label="Cartn_transf_matrix[2][1]")
067        String Cartn_transf_matrix21;
068
069        @CIFLabel(label="Cartn_transf_matrix[2][2]")
070        String Cartn_transf_matrix22;
071
072        @CIFLabel(label="Cartn_transf_matrix[2][3]")
073        String Cartn_transf_matrix23;
074
075        @CIFLabel(label="Cartn_transf_matrix[3][1]")
076        String Cartn_transf_matrix31;
077
078        @CIFLabel(label="Cartn_transf_matrix[3][2]")
079        String Cartn_transf_matrix32;
080
081        @CIFLabel(label="Cartn_transf_matrix[3][3]")
082        String Cartn_transf_matrix33;
083        
084        @CIFLabel(label="Cartn_transf_vector[1]")
085        String Cartn_transf_vector1;
086
087        @CIFLabel(label="Cartn_transf_vector[2]")
088        String Cartn_transf_vector2;
089
090        @CIFLabel(label="Cartn_transf_vector[3]")
091        String Cartn_transf_vector3;
092
093        
094        public String getEntry_id() {
095                return entry_id;
096        }
097        public void setEntry_id(String entry_id) {
098                this.entry_id = entry_id;
099        }
100        /**
101         * @return the cartn_transform_axes
102         */
103        public String getCartn_transform_axes() {
104                return Cartn_transform_axes;
105        }
106        /**
107         * @param cartn_transform_axes the cartn_transform_axes to set
108         */
109        public void setCartn_transform_axes(String cartn_transform_axes) {
110                Cartn_transform_axes = cartn_transform_axes;
111        }
112        /**
113         * @return the fract_transf_matrix11
114         */
115        public String getFract_transf_matrix11() {
116                return fract_transf_matrix11;
117        }
118        /**
119         * @param fract_transf_matrix11 the fract_transf_matrix11 to set
120         */
121        public void setFract_transf_matrix11(String fract_transf_matrix11) {
122                this.fract_transf_matrix11 = fract_transf_matrix11;
123        }
124        /**
125         * @return the fract_transf_matrix12
126         */
127        public String getFract_transf_matrix12() {
128                return fract_transf_matrix12;
129        }
130        /**
131         * @param fract_transf_matrix12 the fract_transf_matrix12 to set
132         */
133        public void setFract_transf_matrix12(String fract_transf_matrix12) {
134                this.fract_transf_matrix12 = fract_transf_matrix12;
135        }
136        /**
137         * @return the fract_transf_matrix13
138         */
139        public String getFract_transf_matrix13() {
140                return fract_transf_matrix13;
141        }
142        /**
143         * @param fract_transf_matrix13 the fract_transf_matrix13 to set
144         */
145        public void setFract_transf_matrix13(String fract_transf_matrix13) {
146                this.fract_transf_matrix13 = fract_transf_matrix13;
147        }
148        /**
149         * @return the fract_transf_matrix21
150         */
151        public String getFract_transf_matrix21() {
152                return fract_transf_matrix21;
153        }
154        /**
155         * @param fract_transf_matrix21 the fract_transf_matrix21 to set
156         */
157        public void setFract_transf_matrix21(String fract_transf_matrix21) {
158                this.fract_transf_matrix21 = fract_transf_matrix21;
159        }
160        /**
161         * @return the fract_transf_matrix22
162         */
163        public String getFract_transf_matrix22() {
164                return fract_transf_matrix22;
165        }
166        /**
167         * @param fract_transf_matrix22 the fract_transf_matrix22 to set
168         */
169        public void setFract_transf_matrix22(String fract_transf_matrix22) {
170                this.fract_transf_matrix22 = fract_transf_matrix22;
171        }
172        /**
173         * @return the fract_transf_matrix23
174         */
175        public String getFract_transf_matrix23() {
176                return fract_transf_matrix23;
177        }
178        /**
179         * @param fract_transf_matrix23 the fract_transf_matrix23 to set
180         */
181        public void setFract_transf_matrix23(String fract_transf_matrix23) {
182                this.fract_transf_matrix23 = fract_transf_matrix23;
183        }
184        /**
185         * @return the fract_transf_matrix31
186         */
187        public String getFract_transf_matrix31() {
188                return fract_transf_matrix31;
189        }
190        /**
191         * @param fract_transf_matrix31 the fract_transf_matrix31 to set
192         */
193        public void setFract_transf_matrix31(String fract_transf_matrix31) {
194                this.fract_transf_matrix31 = fract_transf_matrix31;
195        }
196        /**
197         * @return the fract_transf_matrix32
198         */
199        public String getFract_transf_matrix32() {
200                return fract_transf_matrix32;
201        }
202        /**
203         * @param fract_transf_matrix32 the fract_transf_matrix32 to set
204         */
205        public void setFract_transf_matrix32(String fract_transf_matrix32) {
206                this.fract_transf_matrix32 = fract_transf_matrix32;
207        }
208        /**
209         * @return the fract_transf_matrix33
210         */
211        public String getFract_transf_matrix33() {
212                return fract_transf_matrix33;
213        }
214        /**
215         * @param fract_transf_matrix33 the fract_transf_matrix33 to set
216         */
217        public void setFract_transf_matrix33(String fract_transf_matrix33) {
218                this.fract_transf_matrix33 = fract_transf_matrix33;
219        }
220        /**
221         * @return the fract_transf_vector1
222         */
223        public String getFract_transf_vector1() {
224                return fract_transf_vector1;
225        }
226        /**
227         * @param fract_transf_vector1 the fract_transf_vector1 to set
228         */
229        public void setFract_transf_vector1(String fract_transf_vector1) {
230                this.fract_transf_vector1 = fract_transf_vector1;
231        }
232        /**
233         * @return the fract_transf_vector2
234         */
235        public String getFract_transf_vector2() {
236                return fract_transf_vector2;
237        }
238        /**
239         * @param fract_transf_vector2 the fract_transf_vector2 to set
240         */
241        public void setFract_transf_vector2(String fract_transf_vector2) {
242                this.fract_transf_vector2 = fract_transf_vector2;
243        }
244        /**
245         * @return the fract_transf_vector3
246         */
247        public String getFract_transf_vector3() {
248                return fract_transf_vector3;
249        }
250        /**
251         * @param fract_transf_vector3 the fract_transf_vector3 to set
252         */
253        public void setFract_transf_vector3(String fract_transf_vector3) {
254                this.fract_transf_vector3 = fract_transf_vector3;
255        }
256        /**
257         * @return the cartn_transf_matrix11
258         */
259        public String getCartn_transf_matrix11() {
260                return Cartn_transf_matrix11;
261        }
262        /**
263         * @param cartn_transf_matrix11 the cartn_transf_matrix11 to set
264         */
265        public void setCartn_transf_matrix11(String cartn_transf_matrix11) {
266                Cartn_transf_matrix11 = cartn_transf_matrix11;
267        }
268        /**
269         * @return the cartn_transf_matrix12
270         */
271        public String getCartn_transf_matrix12() {
272                return Cartn_transf_matrix12;
273        }
274        /**
275         * @param cartn_transf_matrix12 the cartn_transf_matrix12 to set
276         */
277        public void setCartn_transf_matrix12(String cartn_transf_matrix12) {
278                Cartn_transf_matrix12 = cartn_transf_matrix12;
279        }
280        /**
281         * @return the cartn_transf_matrix13
282         */
283        public String getCartn_transf_matrix13() {
284                return Cartn_transf_matrix13;
285        }
286        /**
287         * @param cartn_transf_matrix13 the cartn_transf_matrix13 to set
288         */
289        public void setCartn_transf_matrix13(String cartn_transf_matrix13) {
290                Cartn_transf_matrix13 = cartn_transf_matrix13;
291        }
292        /**
293         * @return the cartn_transf_matrix21
294         */
295        public String getCartn_transf_matrix21() {
296                return Cartn_transf_matrix21;
297        }
298        /**
299         * @param cartn_transf_matrix21 the cartn_transf_matrix21 to set
300         */
301        public void setCartn_transf_matrix21(String cartn_transf_matrix21) {
302                Cartn_transf_matrix21 = cartn_transf_matrix21;
303        }
304        /**
305         * @return the cartn_transf_matrix22
306         */
307        public String getCartn_transf_matrix22() {
308                return Cartn_transf_matrix22;
309        }
310        /**
311         * @param cartn_transf_matrix22 the cartn_transf_matrix22 to set
312         */
313        public void setCartn_transf_matrix22(String cartn_transf_matrix22) {
314                Cartn_transf_matrix22 = cartn_transf_matrix22;
315        }
316        /**
317         * @return the cartn_transf_matrix23
318         */
319        public String getCartn_transf_matrix23() {
320                return Cartn_transf_matrix23;
321        }
322        /**
323         * @param cartn_transf_matrix23 the cartn_transf_matrix23 to set
324         */
325        public void setCartn_transf_matrix23(String cartn_transf_matrix23) {
326                Cartn_transf_matrix23 = cartn_transf_matrix23;
327        }
328        /**
329         * @return the cartn_transf_matrix31
330         */
331        public String getCartn_transf_matrix31() {
332                return Cartn_transf_matrix31;
333        }
334        /**
335         * @param cartn_transf_matrix31 the cartn_transf_matrix31 to set
336         */
337        public void setCartn_transf_matrix31(String cartn_transf_matrix31) {
338                Cartn_transf_matrix31 = cartn_transf_matrix31;
339        }
340        /**
341         * @return the cartn_transf_matrix32
342         */
343        public String getCartn_transf_matrix32() {
344                return Cartn_transf_matrix32;
345        }
346        /**
347         * @param cartn_transf_matrix32 the cartn_transf_matrix32 to set
348         */
349        public void setCartn_transf_matrix32(String cartn_transf_matrix32) {
350                Cartn_transf_matrix32 = cartn_transf_matrix32;
351        }
352        /**
353         * @return the cartn_transf_matrix33
354         */
355        public String getCartn_transf_matrix33() {
356                return Cartn_transf_matrix33;
357        }
358        /**
359         * @param cartn_transf_matrix33 the cartn_transf_matrix33 to set
360         */
361        public void setCartn_transf_matrix33(String cartn_transf_matrix33) {
362                Cartn_transf_matrix33 = cartn_transf_matrix33;
363        }
364        /**
365         * @return the cartn_transf_vector1
366         */
367        public String getCartn_transf_vector1() {
368                return Cartn_transf_vector1;
369        }
370        /**
371         * @param cartn_transf_vector1 the cartn_transf_vector1 to set
372         */
373        public void setCartn_transf_vector1(String cartn_transf_vector1) {
374                Cartn_transf_vector1 = cartn_transf_vector1;
375        }
376        /**
377         * @return the cartn_transf_vector2
378         */
379        public String getCartn_transf_vector2() {
380                return Cartn_transf_vector2;
381        }
382        /**
383         * @param cartn_transf_vector2 the cartn_transf_vector2 to set
384         */
385        public void setCartn_transf_vector2(String cartn_transf_vector2) {
386                Cartn_transf_vector2 = cartn_transf_vector2;
387        }
388        /**
389         * @return the cartn_transf_vector3
390         */
391        public String getCartn_transf_vector3() {
392                return Cartn_transf_vector3;
393        }
394        /**
395         * @param cartn_transf_vector3 the cartn_transf_vector3 to set
396         */
397        public void setCartn_transf_vector3(String cartn_transf_vector3) {
398                Cartn_transf_vector3 = cartn_transf_vector3;
399        }
400
401}