001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 * Created on 2012-02-11
021 *
022 */
023
024package org.biojava.nbio.ws.alignment.qblast;
025
026/**
027 * Output parameters accepted by QBlast service. <br/>
028 * Not all are mandatory. Certain parameters only work with a subset of other parameters in the list.
029 * <p/>
030 * Taken from <a href=https://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/new/node9.html>Blast URL API</a>
031 *
032 * @author Gediminas Rimsa
033 */
034public enum BlastOutputParameterEnum {
035
036        ALIGNMENTS,
037        ALIGNMENT_VIEW,
038        DESCRIPTIONS,
039        DATABASE_SORT,
040        DISPLAY_SORT,
041        EXPECT_HIGH,
042        EXPECT_LOW,
043        FORMAT_OBJECT,
044        FORMAT_ENTREZ_QUERY,
045        FORMAT_TYPE,
046        HSP_SORT,
047        I_THRESH,
048        MASK_CHAR,
049        MASK_COLOR,
050        NCBI_GI,
051        NOHEADER,
052        NUM_OVERVIEW,
053        RID,
054        SHOW_CDS_FEATURE,
055        SHOW_LINKOUT,
056        SHOW_OVERVIEW
057
058}