public class EmblRecord extends Object
Constructor and Description |
---|
EmblRecord() |
Modifier and Type | Method and Description |
---|---|
List<String> |
getAccessionNumber()
The AC (Accession number) line lists the accession numbers associated with
the entry.
|
String |
getAssemblyHeader()
The AH (Assembly Header) line provides column headings for the assembly information.
|
String |
getAssemblyInformation()
The AS (Assembly Information) lines provide information on the composition of
a TPA or TSA sequence.
|
String |
getConstructedSequence()
Con(structed) sequences in the CON data classes represent complete
chromosomes, genomes and other long sequences constructed from segment entries.
|
String |
getCreatedDate()
The DT line shows when an entry first appeared in the database
|
String |
getDatabaseCrossReference()
The DR (Database Cross-reference) line cross-references other databases which
contain information related to the entry in which the DR line appears.
|
EmblId |
getEmblId()
The ID (IDentification) line
The tokens represent:
1.
|
List<EmblReference> |
getEmblReference()
The Reference (RN, RC, RP, RX, RG, RA, RT, RL) Lines
These lines comprise the literature citations within the database.
|
String |
getFeatureHeader()
The FH (Feature Header) lines are present only to improve readability of
an entry when it is printed or displayed on a terminal screen.
|
String |
getFeatureTable()
The FT (Feature Table) lines provide a mechanism for the annotation of the
sequence data.
|
List<String> |
getKeyword()
The KW (KeyWord) lines provide information which can be used to generate
cross-reference indexes of the sequence entries based on functional,
structural, or other categories deemed important.
|
String |
getLastUpdatedDate()
The DT (DaTe) line shows when an entry was last updated in the database.
|
String |
getOrGanelle()
The OG (OrGanelle) linetype indicates the sub-cellular location of non-nuclear
sequences.
|
String |
getOrganismClassification()
The OC (Organism Classification) lines contain the taxonomic classification
Of the source organism
|
String |
getOrganismSpecies()
The OS (Organism Species) line specifies the preferred scientific name of
the organism which was the source of the stored sequence.
|
String |
getProjectIdentifier() |
String |
getSequence()
The Sequence Data Line
|
String |
getSequenceDescription()
The DE (Description) lines contain general descriptive information about the
sequence stored.
|
String |
getSequenceHeader()
The SQ (SeQuence header) line marks the beginning of the sequence data and
Gives a summary of its content.
|
void |
setAccessionNumber(List<String> accessionNumber) |
void |
setAssemblyHeader(String assemblyHeader) |
void |
setAssemblyInformation(String assemblyInformation) |
void |
setConstructedSequence(String constructedSequence) |
void |
setCreatedDate(String createdDate) |
void |
setDatabaseCrossReference(String databaseCrossReference) |
void |
setEmblId(EmblId emblId) |
void |
setEmblReference(List<EmblReference> emblReference) |
void |
setFeatureHeader(String featureHeader) |
void |
setFeatureTable(String featureTable) |
void |
setKeyword(List<String> keyword) |
void |
setLastUpdatedDate(String lastUpdatedDate) |
void |
setOrGanelle(String orGanelle) |
void |
setOrganismClassification(String organismClassification) |
void |
setOrganismSpecies(String organismSpecies) |
void |
setProjectIdentifier(String projectIdentifier) |
void |
setSequence(String sequence) |
void |
setSequenceDescription(String sequenceDescription) |
void |
setSequenceHeader(String sequenceHeader) |
public EmblRecord()
public EmblId getEmblId()
public List<EmblReference> getEmblReference()
public void setEmblReference(List<EmblReference> emblReference)
public List<String> getAccessionNumber()
public void setAccessionNumber(List<String> accessionNumber)
public String getProjectIdentifier()
public void setProjectIdentifier(String projectIdentifier)
public String getOrGanelle()
public void setOrGanelle(String orGanelle)
public String getCreatedDate()
public void setCreatedDate(String createdDate)
public String getFeatureHeader()
public void setFeatureHeader(String featureHeader)
public String getFeatureTable()
public void setFeatureTable(String featureTable)
public String getLastUpdatedDate()
public void setLastUpdatedDate(String lastUpdatedDate)
public String getSequenceDescription()
public void setSequenceDescription(String sequenceDescription)
public List<String> getKeyword()
public void setKeyword(List<String> keyword)
public String getOrganismSpecies()
public void setOrganismSpecies(String organismSpecies)
public String getOrganismClassification()
public void setOrganismClassification(String organismClassification)
public String getDatabaseCrossReference()
public void setDatabaseCrossReference(String databaseCrossReference)
public String getAssemblyHeader()
public void setAssemblyHeader(String assemblyHeader)
public String getAssemblyInformation()
public void setAssemblyInformation(String assemblyInformation)
public String getConstructedSequence()
public void setConstructedSequence(String constructedSequence)
public String getSequenceHeader()
public void setSequenceHeader(String sequenceHeader)
public String getSequence()
public void setSequence(String sequence)
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