/*
 *                    BioJava development code
 *
 * This code may be freely distributed and modified under the
 * terms of the GNU Lesser General Public Licence.  This should
 * be distributed with the code.  If you do not have a copy,
 * see:
 *
 *      http://www.gnu.org/copyleft/lesser.html
 *
 * Copyright for this code is held jointly by the individual
 * authors.  These should be listed in @author doc comments.
 *
 * For more information on the BioJava project and its aims,
 * or to join the biojava-l mailing list, visit the home page
 * at:
 *
 *      http://www.biojava.org/
 *
 * created at 28 Jan 2014
 * Author: Andreas Prlic
 */

package org.biojava.nbio.genome.parsers.genename;

import java.io.Serializable;

/** 
 * A simple bean that contains gene name information as available from www.genenames.org
 *
 * @author Andreas Prlic
 *
 */
public class GeneName implements Serializable, Comparable<GeneName>{
        //[HGNC ID, Approved Symbol, Approved Name, Status, Previous Symbols, Previous Names, Synonyms,
        // Chromosome, Accession Numbers, RefSeq IDs,Uniprot]

        private static final long serialVersionUID = -7163977639324764020L;
        
        private String hgncId;
        private String approvedSymbol;
        private String approvedName;
        private String status;
        private String previousSymbols;
        private String previousNames;
        private String synonyms;
        private String chromosome;
        private String accessionNr;
        private String refseqIds;
        private String uniprot;
        private String omimId;
        private String ensemblGeneId;

        public String getHgncId() {
                return hgncId;
        }
        public void setHgncId(String hgncId) {
                this.hgncId = hgncId;
        }
        public String getApprovedSymbol() {
                return approvedSymbol;
        }
        public void setApprovedSymbol(String approvedSymbol) {
                this.approvedSymbol = approvedSymbol;
        }
        public String getApprovedName() {
                return approvedName;
        }
        public void setApprovedName(String approvedName) {
                this.approvedName = approvedName;
        }
        public String getStatus() {
                return status;
        }
        public void setStatus(String status) {
                this.status = status;
        }
        public String getPreviousSymbols() {
                return previousSymbols;
        }
        public void setPreviousSymbols(String previousSymbols) {
                this.previousSymbols = previousSymbols;
        }
        public String getPreviousNames() {
                return previousNames;
        }
        public void setPreviousNames(String previousNames) {
                this.previousNames = previousNames;
        }
        public String getSynonyms() {
                return synonyms;
        }
        public void setSynonyms(String synonyms) {
                this.synonyms = synonyms;
        }
        public String getChromosome() {
                return chromosome;
        }
        public void setChromosome(String chromosome) {
                this.chromosome = chromosome;
        }
        public String getAccessionNr() {
                return accessionNr;
        }
        public void setAccessionNr(String accessionNr) {
                this.accessionNr = accessionNr;
        }
        public String getRefseqIds() {
                return refseqIds;
        }
        public void setRefseqIds(String refseqIds) {
                this.refseqIds = refseqIds;
        }
        public String getUniprot() {
                return uniprot;
        }
        public void setUniprot(String uniprot) {
                this.uniprot = uniprot;
        }

        public String getEnsemblGeneId() {
                return ensemblGeneId;
        }
        public void setEnsemblGeneId(String ensemblGeneId) {
                this.ensemblGeneId = ensemblGeneId;
        }
        public String getOmimId() {
                return omimId;
        }
        public void setOmimId(String omimId) {
                this.omimId = omimId;
        }
        @Override
        public int compareTo(GeneName o) {
                return hgncId.compareTo(o.getHgncId());
        }

        public boolean equals(GeneName o){
                return hgncId.equals(o.getHgncId());
        }
        @Override
        public String toString() {
                return "GeneName [hgncId=" + hgncId + ", approvedSymbol="
                                + approvedSymbol + ", approvedName=" + approvedName
                                + ", status=" + status + ", previousSymbols=" + previousSymbols
                                + ", previousNames=" + previousNames + ", synonyms=" + synonyms
                                + ", chromosome=" + chromosome + ", accessionNr=" + accessionNr
                                + ", refseqIds=" + refseqIds + ", uniprot=" + uniprot
                                + ", omimId=" + omimId + ", ensemblGeneId=" + ensemblGeneId
                                + "]";
        }

}