All Methods Static Methods Concrete Methods
Modifier and Type |
Method |
Description |
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Double>> |
getComposition(String sequence) |
|
static Map<IProfeatProperties.GROUPING,Double> |
getComposition(String sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static double |
getComposition(String sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
|
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Double>> |
getComposition(ProteinSequence sequence) |
|
static Map<IProfeatProperties.GROUPING,Double> |
getComposition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static double |
getComposition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
An adaptor method which returns the composition of the specific grouping for the given attribute.
|
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>> |
getDistributionPosition(String sequence) |
|
static Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>> |
getDistributionPosition(String sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static Map<IProfeatProperties.DISTRIBUTION,Double> |
getDistributionPosition(String sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
|
static double |
getDistributionPosition(String sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group,
IProfeatProperties.DISTRIBUTION distribution) |
|
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>>> |
getDistributionPosition(ProteinSequence sequence) |
|
static Map<IProfeatProperties.GROUPING,Map<IProfeatProperties.DISTRIBUTION,Double>> |
getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static Map<IProfeatProperties.DISTRIBUTION,Double> |
getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
|
static double |
getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group,
IProfeatProperties.DISTRIBUTION distribution) |
An adaptor method which computes and return the position with respect to the sequence where the given distribution of the grouping can be found.
Example: "1111122222"
For the above example,
position of the GROUPING.GROUP1 && DISTRIBUTION.FIRST = 0/10 (because the first occurrence of '1' is at position 0)
position of the GROUPING.GROUP1 && DISTRIBUTION.ALL = 4/10 (because all occurrences of '1' happens on and before position 4)
|
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.TRANSITION,Double>> |
getTransition(String sequence) |
|
static Map<IProfeatProperties.TRANSITION,Double> |
getTransition(String sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static double |
getTransition(String sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.TRANSITION transition) |
|
static Map<IProfeatProperties.ATTRIBUTE,Map<IProfeatProperties.TRANSITION,Double>> |
getTransition(ProteinSequence sequence) |
|
static Map<IProfeatProperties.TRANSITION,Double> |
getTransition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static double |
getTransition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.TRANSITION transition) |
An adaptor method which returns the number of transition between the specified groups for the given attribute with respect to the length of sequence.
|