Uses of Class
org.biojava.nbio.aaproperties.xml.AminoAcidCompositionTable

Packages that use AminoAcidCompositionTable

Package	Description
org.biojava.nbio.aaproperties	Set of classes that responsible for providing APIs and Command Prompt access to generate some basic physico-chemical properties of protein sequences.

Uses of AminoAcidCompositionTable in org.biojava.nbio.aaproperties

Methods in org.biojava.nbio.aaproperties that return AminoAcidCompositionTable

Modifier and Type	Method	Description
AminoAcidCompositionTable	IPeptideProperties.obtainAminoAcidCompositionTable(File aminoAcidCompositionFile)	This method would initialize amino acid composition table based on the input xml files and stores the table for usage in future calls to IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence, AminoAcidCompositionTable).
AminoAcidCompositionTable	IPeptideProperties.obtainAminoAcidCompositionTable(File elementMassFile, File aminoAcidCompositionFile)	This method would initialize amino acid composition table based on the input xml files and stores the table for usage in future calls to IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence, AminoAcidCompositionTable).
static AminoAcidCompositionTable	PeptideProperties.obtainAminoAcidCompositionTable(File aminoAcidCompositionFile)	An adaptor method would initialize amino acid composition table based on the input xml files and stores the table for usage in future calls to IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence, AminoAcidCompositionTable).
static AminoAcidCompositionTable	PeptideProperties.obtainAminoAcidCompositionTable(File elementMassFile, File aminoAcidCompositionFile)	An adaptor method would initialize amino acid composition table based on the input xml files and stores the table for usage in future calls to IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence, AminoAcidCompositionTable).
AminoAcidCompositionTable	PeptidePropertiesImpl.obtainAminoAcidCompositionTable(File aminoAcidCompositionFile)
AminoAcidCompositionTable	PeptidePropertiesImpl.obtainAminoAcidCompositionTable(File elementMassFile, File aminoAcidCompositionFile)

Methods in org.biojava.nbio.aaproperties with parameters of type AminoAcidCompositionTable

Modifier and Type	Method	Description
double	IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence sequence, AminoAcidCompositionTable aminoAcidCompositionTable)	Returns the molecular weight of sequence.
static double	PeptideProperties.getMolecularWeightBasedOnXML(String sequence, AminoAcidCompositionTable aminoAcidCompositionTable)	An adaptor method that returns the molecular weight of sequence.
double	PeptidePropertiesImpl.getMolecularWeightBasedOnXML(ProteinSequence sequence, AminoAcidCompositionTable aminoAcidCompositionTable)