Package org.biojava.nbio.alignment.io

Class StockholmStructure.DatabaseReference

java.lang.Object

org.biojava.nbio.alignment.io.StockholmStructure.DatabaseReference

Enclosing class:

StockholmStructure

public static class StockholmStructure.DatabaseReference
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
static String	EXPERT
static String	HOMSTRAD
static String	INTERPRO
static String	LOAD
static String	MIM
static String	PDB
static String	PFAMB
static String	PRINTS
static String	PROSITE
static String	PROSITE_PROFILE
static String	SCOP
static String	SMART
static String	URL

Constructor Summary

Constructors

Constructor	Description
DatabaseReference(String representativeAnnotationString)
DatabaseReference(String database, String reference)

Method Summary

Modifier and Type	Method	Description
String	getDatabase()
String	getReference()
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

EXPERT

public static final String EXPERT

See Also:

Constant Field Values

MIM

public static final String MIM

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Constant Field Values

PFAMB

public static final String PFAMB

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Constant Field Values

PRINTS

public static final String PRINTS

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Constant Field Values

PROSITE

public static final String PROSITE

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Constant Field Values

PROSITE_PROFILE

public static final String PROSITE_PROFILE

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Constant Field Values

SCOP

public static final String SCOP

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Constant Field Values

PDB

public static final String PDB

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Constant Field Values

SMART

public static final String SMART

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Constant Field Values

URL

public static final String URL

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Constant Field Values

LOAD

public static final String LOAD

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Constant Field Values

HOMSTRAD

public static final String HOMSTRAD

See Also:

Constant Field Values

INTERPRO

public static final String INTERPRO

See Also:

Constant Field Values

Constructor Detail

DatabaseReference

public DatabaseReference(String database,
                         String reference)

DatabaseReference

public DatabaseReference(String representativeAnnotationString)

Method Detail

toString

public String toString()

Overrides:

toString in class Object

getDatabase

public String getDatabase()

getReference

public String getReference()