Alignments.PairInProfileScorerType |
List of implemented sequence pair in a profile scoring routines.
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Alignments.PairwiseSequenceAlignerType |
List of implemented pairwise sequence alignment routines.
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Alignments.PairwiseSequenceScorerType |
List of implemented pairwise sequence scoring routines.
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Alignments.ProfileProfileAlignerType |
List of implemented profile-profile alignment routines.
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Alignments.RefinerType |
List of implemented profile refinement routines.
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FractionalIdentityScorer |
Implements an algorithm which computes a score for a sequence alignment pair.
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FractionalSimilarityScorer |
Implements an algorithm which computes a score for a sequence alignment pair.
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GuideTree |
Implements a data structure for a guide tree used during progressive multiple sequence alignment.
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GuideTree.Node |
Implements a data structure for the node in a guide tree used during progressive multiple sequence alignment.
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