Uses of Class
org.biojava.nbio.alignment.template.AbstractPairwiseSequenceAligner
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Packages that use AbstractPairwiseSequenceAligner Package Description org.biojava.nbio.alignment org.biojava.nbio.alignment.routines -
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Uses of AbstractPairwiseSequenceAligner in org.biojava.nbio.alignment
Subclasses of AbstractPairwiseSequenceAligner in org.biojava.nbio.alignment Modifier and Type Class Description class
NeedlemanWunsch<S extends Sequence<C>,C extends Compound>
class
SmithWaterman<S extends Sequence<C>,C extends Compound>
Smith and Waterman defined an algorithm for pairwise local sequence alignments (best match of sections from eachSequence
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Uses of AbstractPairwiseSequenceAligner in org.biojava.nbio.alignment.routines
Subclasses of AbstractPairwiseSequenceAligner in org.biojava.nbio.alignment.routines Modifier and Type Class Description class
AnchoredPairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>
class
GuanUberbacher<S extends Sequence<C>,C extends Compound>
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