Uses of Interface
org.biojava.nbio.alignment.template.MatrixAligner
-
Packages that use MatrixAligner Package Description org.biojava.nbio.alignment org.biojava.nbio.alignment.routines org.biojava.nbio.alignment.template -
-
Uses of MatrixAligner in org.biojava.nbio.alignment
Classes in org.biojava.nbio.alignment that implement MatrixAligner Modifier and Type Class Description class
NeedlemanWunsch<S extends Sequence<C>,C extends Compound>
class
SimpleProfileProfileAligner<S extends Sequence<C>,C extends Compound>
class
SmithWaterman<S extends Sequence<C>,C extends Compound>
Smith and Waterman defined an algorithm for pairwise local sequence alignments (best match of sections from eachSequence
). -
Uses of MatrixAligner in org.biojava.nbio.alignment.routines
Classes in org.biojava.nbio.alignment.routines that implement MatrixAligner Modifier and Type Class Description class
AnchoredPairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>
class
GuanUberbacher<S extends Sequence<C>,C extends Compound>
-
Uses of MatrixAligner in org.biojava.nbio.alignment.template
Classes in org.biojava.nbio.alignment.template that implement MatrixAligner Modifier and Type Class Description class
AbstractMatrixAligner<S extends Sequence<C>,C extends Compound>
Implements common code for anAligner
which builds a score matrix during computation.class
AbstractPairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>
class
AbstractProfileProfileAligner<S extends Sequence<C>,C extends Compound>
-