Class DefaultAAIndexProvider
- java.lang.Object
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- org.biojava.nbio.core.alignment.matrices.DefaultAAIndexProvider
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- All Implemented Interfaces:
AAIndexProvider
public class DefaultAAIndexProvider extends Object implements AAIndexProvider
The default provider for AAINDEX loads substitution matrices from the AAINDEX file in the resources directory- Author:
- Andreas Prlic
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Constructor Summary
Constructors Constructor Description DefaultAAIndexProvider()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description InputStream
getInputStreamToAAindexFile()
SubstitutionMatrix<AminoAcidCompound>
getMatrix(String matrixName)
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Constructor Detail
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DefaultAAIndexProvider
public DefaultAAIndexProvider()
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Method Detail
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getMatrix
public SubstitutionMatrix<AminoAcidCompound> getMatrix(String matrixName)
- Specified by:
getMatrix
in interfaceAAIndexProvider
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getInputStreamToAAindexFile
public InputStream getInputStreamToAAindexFile()
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