Hierarchy For Package org.biojava.nbio.core.alignment.template

Package Hierarchies:

• All Packages

Interface Hierarchy

• org.biojava.nbio.core.sequence.template.Accessioned
  • org.biojava.nbio.core.sequence.template.Sequence<C> (also extends java.lang.Iterable<T>)
    • org.biojava.nbio.core.alignment.template.AlignedSequence<S,C>
      • org.biojava.nbio.core.alignment.template.MutableAlignedSequence<S,C>
• java.lang.Iterable<T>
  • org.biojava.nbio.core.alignment.template.Profile<S,C>
    • org.biojava.nbio.core.alignment.template.MutableProfile<S,C>
      • org.biojava.nbio.core.alignment.template.MutableProfilePair<S,C> (also extends org.biojava.nbio.core.alignment.template.ProfilePair<S,C>)
      • org.biojava.nbio.core.alignment.template.MutableSequencePair<S,C> (also extends org.biojava.nbio.core.alignment.template.SequencePair<S,C>)
    • org.biojava.nbio.core.alignment.template.ProfilePair<S,C>
      • org.biojava.nbio.core.alignment.template.MutableProfilePair<S,C> (also extends org.biojava.nbio.core.alignment.template.MutableProfile<S,C>)
    • org.biojava.nbio.core.alignment.template.ProfileView<S,C>
    • org.biojava.nbio.core.alignment.template.SequencePair<S,C>
      • org.biojava.nbio.core.alignment.template.MutableSequencePair<S,C> (also extends org.biojava.nbio.core.alignment.template.MutableProfile<S,C>)
  • org.biojava.nbio.core.sequence.template.Sequence<C> (also extends org.biojava.nbio.core.sequence.template.Accessioned)
    • org.biojava.nbio.core.alignment.template.AlignedSequence<S,C>
      • org.biojava.nbio.core.alignment.template.MutableAlignedSequence<S,C>
• org.biojava.nbio.core.alignment.template.SubstitutionMatrix<C>

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.biojava.nbio.core.alignment.template.AlignedSequence.Step
    • org.biojava.nbio.core.alignment.template.Profile.StringFormat