QualityFeature (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.core.sequence.features.AbstractFeature<S,C>
- - org.biojava.nbio.core.sequence.features.QualityFeature<S,C>

All Implemented Interfaces:

FeatureInterface<S,C>
```
public class QualityFeature<S extends AbstractSequence<C>,C extends Compound>
extends AbstractFeature<S,C>
```
DNA Sequences produced by modern sequencers usually have quality informaion attached to them. This feature allows to store the information directly in the DNASequence

Since:

3.0.3

Author:

brandstaetter

Field Summary
- Fields inherited from class org.biojava.nbio.core.sequence.features.AbstractFeature
  LENGTH, LOCATION_LENGTH, TYPE

Constructor Summary

Constructors
Constructor Description

QualityFeature(String type, String source)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`List<Number>`	`getQualities()`
`List<Number>`	`getQualities(int biostart, int bioend)`
`Number`	`getQualityAt(int bioindex)`
`void`	`setQualities(List<Number> qualities)`

Methods inherited from class org.biojava.nbio.core.sequence.features.AbstractFeature
addQualifier, getChildrenFeatures, getDescription, getLocations, getParentFeature, getQualifiers, getShortDescription, getSource, getType, getUserObject, setChildrenFeatures, setDescription, setLocation, setParentFeature, setQualifiers, setShortDescription, setSource, setType, setUserObject

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - QualityFeature
```
public QualityFeature(String type,
                      String source)
```
    Parameters:
    
    type -
    
    source -
- Method Detail
  - getQualities
```
public List<Number> getQualities()
```
    Returns:
    
    the qualities
  - setQualities
```
public void setQualities(List<Number> qualities)
```
    Parameters:
    
    qualities - the qualities to set
  - getQualityAt
```
public Number getQualityAt(int bioindex)
```
    Parameters:
    
    bioindex - the biological index (starts with 1)
    
    Returns:
    
    the quality value at the given biological index (starts with 1)
  - getQualities
```
public List<Number> getQualities(int biostart,
                                 int bioend)
```
    Parameters:
    
    biostart - biological start index (starts with 1)
    
    bioend - biological end index (starts with 1)
    
    Returns:
    
    a sublist of the qualities between the given biological indices