Package org.biojava.nbio.core.sequence.template
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Interface Summary Interface Description Accessioned Indicates an entity is accessionedComplementCompound Compound CompoundSet<C extends Compound> CompoundTranslator<F extends Compound,T extends Compound> LightweightProfile<S extends Sequence<C>,C extends Compound> Defines a minimal data structure for reading and writing a sequence alignment.ProxySequenceReader<C extends Compound> Sequence<C extends Compound> Main interface for defining a collection of Compounds and accessing them using biological indexesSequenceReader<C extends Compound> SequenceView<C extends Compound> -
Class Summary Class Description AbstractCompound The details of a CompoundAbstractCompoundSet<C extends Compound> AbstractCompoundTranslator<F extends Compound,T extends Compound> AbstractNucleotideCompoundSet<C extends NucleotideCompound> AbstractSequence<C extends Compound> The base class for DNA, RNA and Protein sequences.SequenceMixin Provides a set of static methods to be used as static imports when needed across multiple Sequence implementations but inheritance gets in the way.SequenceMixin.SequenceIterator<C extends Compound> A basic sequence iterator which iterates over the given Sequence by biological index.SequenceProxyView<C extends Compound> -
Enum Summary Enum Description AbstractSequence.AnnotationType LightweightProfile.StringFormat List of output formats.