Uses of Package
org.biojava.nbio.core.sequence.transcription
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Packages that use org.biojava.nbio.core.sequence.transcription Package Description org.biojava.nbio.core.sequence org.biojava.nbio.core.sequence.io org.biojava.nbio.core.sequence.transcription -
Classes in org.biojava.nbio.core.sequence.transcription used by org.biojava.nbio.core.sequence Class Description Frame Indicates a way of translating a sequence.TranscriptionEngine Used as a way of encapsulating the data structures required to parse DNA to a Protein sequence. -
Classes in org.biojava.nbio.core.sequence.transcription used by org.biojava.nbio.core.sequence.io Class Description Table Provides a way of separating us from the specificIUPACParser.IUPACTable
even though this is the only implementing class for the interface.Table.Codon Instance of a Codon which is 3NucleotideCompound
s, its correspondingAminoAcidCompound
and if it is a start or stop codon. -
Classes in org.biojava.nbio.core.sequence.transcription used by org.biojava.nbio.core.sequence.transcription Class Description DNAToRNATranslator Performs the first stage of transcription by going from DNA to RNA.Frame Indicates a way of translating a sequence.RNAToAminoAcidTranslator Takes aSequence
ofNucleotideCompound
which should represent an RNA sequence (RNASequence
is good for this) and returns a list ofSequence
which holdAminoAcidCompound
.Table Provides a way of separating us from the specificIUPACParser.IUPACTable
even though this is the only implementing class for the interface.Table.CaseInsensitiveTriplet Class used to hold three nucleotides together and allow for equality to be assessed in a case insensitive manner.Table.Codon Instance of a Codon which is 3NucleotideCompound
s, its correspondingAminoAcidCompound
and if it is a start or stop codon.TranscriptionEngine Used as a way of encapsulating the data structures required to parse DNA to a Protein sequence.TranscriptionEngine.Builder This class is the way to create aTranslationEngine
.