Uses of Class
org.biojava.nbio.core.util.PrettyXMLWriter
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Packages that use PrettyXMLWriter Package Description org.biojava.nbio.protmod.io org.biojava.nbio.structure.align.xml Serialization and deserialization for structure alignment results (as AFPChain object) to XML.org.biojava.nbio.structure.quaternary -
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Uses of PrettyXMLWriter in org.biojava.nbio.protmod.io
Methods in org.biojava.nbio.protmod.io with parameters of type PrettyXMLWriter Modifier and Type Method Description static void
ComponentXMLConverter. toXML(Component component, PrettyXMLWriter xml)
static void
StructureAtomXMLConverter. toXML(StructureAtom atom, PrettyXMLWriter xml)
static void
StructureGroupXMLConverter. toXML(StructureGroup group, PrettyXMLWriter xml)
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Uses of PrettyXMLWriter in org.biojava.nbio.structure.align.xml
Methods in org.biojava.nbio.structure.align.xml with parameters of type PrettyXMLWriter Modifier and Type Method Description static void
MultipleAlignmentXMLConverter. printXMLalignment(PrettyXMLWriter xml, MultipleAlignment msa)
static void
MultipleAlignmentXMLConverter. printXMLblock(PrettyXMLWriter xml, Block b)
static void
MultipleAlignmentXMLConverter. printXMLblockSet(PrettyXMLWriter xml, BlockSet bs)
static void
MultipleAlignmentXMLConverter. printXMLensemble(PrettyXMLWriter xml, MultipleAlignmentEnsemble ensemble)
static void
AFPChainXMLConverter. printXMLEQRInferPositions(PrettyXMLWriter xml, AFPChain afpChain, int bk, Atom[] ca1, Atom[] ca2)
static void
MultipleAlignmentXMLConverter. printXMLheader(PrettyXMLWriter xml, MultipleAlignmentEnsemble ensemble)
static void
AFPChainXMLConverter. printXMLHeader(PrettyXMLWriter xml, AFPChain afpChain)
static void
MultipleAlignmentXMLConverter. printXMLmatrix4d(PrettyXMLWriter xml, javax.vecmath.Matrix4d transform)
static void
MultipleAlignmentXMLConverter. printXMLscoresCache(PrettyXMLWriter xml, ScoresCache cache)
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Uses of PrettyXMLWriter in org.biojava.nbio.structure.quaternary
Methods in org.biojava.nbio.structure.quaternary with parameters of type PrettyXMLWriter Modifier and Type Method Description void
BiologicalAssemblyTransformation. toXML(PrettyXMLWriter xml)
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