Class GeneChromosomePositionParser
- java.lang.Object
-
- org.biojava.nbio.genome.parsers.genename.GeneChromosomePositionParser
-
public class GeneChromosomePositionParser extends Object
A parser that parses a file from the UCSC genome browser that contains mapping of gene name to chromosome positions- Author:
- Andreas Prlic
-
-
Field Summary
Fields Modifier and Type Field Description static String
DEFAULT_MAPPING_URL
-
Constructor Summary
Constructors Constructor Description GeneChromosomePositionParser()
-
Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static List<GeneChromosomePosition>
getChromosomeMappings()
static List<GeneChromosomePosition>
getChromosomeMappings(InputStream inStream)
static void
main(String[] args)
-
-
-
Field Detail
-
DEFAULT_MAPPING_URL
public static final String DEFAULT_MAPPING_URL
- See Also:
- Constant Field Values
-
-
Constructor Detail
-
GeneChromosomePositionParser
public GeneChromosomePositionParser()
-
-
Method Detail
-
getChromosomeMappings
public static List<GeneChromosomePosition> getChromosomeMappings() throws IOException
- Throws:
IOException
-
getChromosomeMappings
public static List<GeneChromosomePosition> getChromosomeMappings(InputStream inStream) throws IOException
- Throws:
IOException
-
-