Dataset (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.phosphosite.Dataset

```
public class Dataset
extends Object
```
Phosphosite is available under the PhosphoSitePlus® is licensed under Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License and is freely available for non-commercial purposes from http://www.phosphosite.org/staticDownloads.do Please acknowledge PhosphoSitePlus®, www.phosphosite.org" at appropriate locations. Please cite : “Hornbeck PV, Kornhauser JM, Tkachev S, Zhang B, Skrzypek E, Murray B, Latham V, Sullivan M (2012) PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res. 40(Database issue), D261–70.”. Created by ap3 on 31/10/2014.

Field Summary

Fields
Modifier and Type	Field	Description
`static String`	`ACETYLATION`
`static String`	`DISEASE_ASSOC`
`static String`	`METHYLATION`
`static String`	`PHOSPHORYLATION`
`static String`	`REGULATORY`
`static String`	`SUMOYLATION`
`static String`	`UBIQUITINATION`

Constructor Summary

Constructors
Constructor Description

Dataset()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static void`	`copyFile(File src, File dst)`
`void`	`download()`
`void`	`downloadFile(URL u, File localFile)`
`File`	`getLocalDir()`
`File[]`	`getLocalFiles()`
`static void`	`main(String[] args)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- ACETYLATION
```
public static final String ACETYLATION
```
  See Also:
  
  Constant Field Values
- DISEASE_ASSOC
```
public static final String DISEASE_ASSOC
```
  See Also:
  
  Constant Field Values
- METHYLATION
```
public static final String METHYLATION
```
  See Also:
  
  Constant Field Values
- PHOSPHORYLATION
```
public static final String PHOSPHORYLATION
```
  See Also:
  
  Constant Field Values
- REGULATORY
```
public static final String REGULATORY
```
  See Also:
  
  Constant Field Values
- SUMOYLATION
```
public static final String SUMOYLATION
```
  See Also:
  
  Constant Field Values
- UBIQUITINATION
```
public static final String UBIQUITINATION
```
  See Also:
  
  Constant Field Values

Constructor Detail
- Dataset
```
public Dataset()
```

Method Detail

getLocalFiles
```
public File[] getLocalFiles()
```

getLocalDir
```
public File getLocalDir()
```

download
```
public void download()
```

downloadFile

public void downloadFile(URL u,
                         File localFile)
                  throws IOException

Throws:: IOException

copyFile

public static void copyFile(File src,
                            File dst)
                     throws IOException

Throws:: IOException

main

public static void main(String[] args)