NucleotideImpl (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.structure.HetatomImpl
- - org.biojava.nbio.structure.NucleotideImpl

All Implemented Interfaces:

Serializable, Group
```
public class NucleotideImpl
extends HetatomImpl
```
A nucleotide group is almost the same as a Hetatm group.

Since:

1.4

Version:

%I% %G%

Author:

Andreas Prlic

See Also:

HetatomImpl, AminoAcidImpl, Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from class org.biojava.nbio.structure.HetatomImpl
  HetatomImpl.PerformanceBehavior

Field Summary

Fields
Modifier and Type Field Description

static GroupType type
this is a "nucleotide", a special occurance of a Hetatom.
- Fields inherited from class org.biojava.nbio.structure.HetatomImpl
  atoms, chemComp, pdb_flag, pdb_name, performanceBehavior, residueNumber
- Fields inherited from interface org.biojava.nbio.structure.Group
  SEC_STRUC

Constructor Summary

Constructors
Constructor Description

NucleotideImpl()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Object`	`clone()`	returns and identical copy of this Group object .
`Atom`	`getO3Prime()`	Returns the O3' atom if present, otherwise null
`Atom`	`getO5Prime()`	Returns the O5' atom if present, otherwise null
`Atom`	`getP()`	Returns the P atom if present, otherwise null
`GroupType`	`getType()`	Get Type of group, one of `GroupType.AMINOACID`, `GroupType.HETATM` or `GroupType.NUCLEOTIDE`
`String`	`toString()`

Methods inherited from class org.biojava.nbio.structure.HetatomImpl
addAltLoc, addAtom, clearAtoms, cloneAtomsAndBonds, getAltLocGroup, getAltLocs, getAtom, getAtom, getAtoms, getChain, getChainId, getChemComp, getId, getPDBName, getProperties, getProperty, getResidueNumber, has3D, hasAltLoc, hasAminoAtoms, hasAtom, isAminoAcid, isHetAtomInFile, isNucleotide, isPolymeric, isWater, iterator, setAtoms, setChain, setChemComp, setHetAtomInFile, setId, setPDBFlag, setPDBName, setProperties, setProperty, setResidueNumber, setResidueNumber, size, toSDF, trimToSize

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - type
```
public static final GroupType type
```
    this is a "nucleotide", a special occurance of a Hetatom.
- Constructor Detail
  - NucleotideImpl
```
public NucleotideImpl()
```
- Method Detail
  - getType
```
public GroupType getType()
```
    Description copied from class: HetatomImpl
    
    Get Type of group, one of GroupType.AMINOACID, GroupType.HETATM or GroupType.NUCLEOTIDE
    
    Specified by:
    
    getType in interface Group
    
    Overrides:
    
    getType in class HetatomImpl
    
    Returns:
    
    a String representing the type value
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class HetatomImpl
  - getO3Prime
```
public Atom getO3Prime()
```
    Returns the O3' atom if present, otherwise null
    
    Returns:
    
    O3' atom or null
  - getO5Prime
```
public Atom getO5Prime()
```
    Returns the O5' atom if present, otherwise null
    
    Returns:
    
    O5' atom or null
  - getP
```
public Atom getP()
```
    Returns the P atom if present, otherwise null
    
    Returns:
    
    P atom or null
  - clone
```
public Object clone()
```
    Description copied from class: HetatomImpl
    
    returns and identical copy of this Group object .
    
    Specified by:
    
    clone in interface Group
    
    Overrides:
    
    clone in class HetatomImpl
    
    Returns:
    
    and identical copy of this Group object