Package org.biojava.nbio.structure.align.fatcat.calc

Class AFPCalculator

java.lang.Object

org.biojava.nbio.structure.align.fatcat.calc.AFPCalculator

public class AFPCalculator
extends Object

a class that performs calculations on AFPCHains

Author:

Andreas Prlic

Field Summary

Fields

Modifier and Type	Field	Description
static boolean	debug

Constructor Summary

Constructors

Constructor	Description
AFPCalculator()

Method Summary

Modifier and Type	Method	Description
static void	extractAFPChains(FatCatParameters params, AFPChain afpChain, Atom[] ca1, Atom[] ca2)
static void	sortAfps(AFPChain afpChain, Atom[] ca1, Atom[] ca2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

debug

public static final boolean debug

See Also:

Constant Field Values

Constructor Detail

AFPCalculator

public AFPCalculator()

Method Detail

extractAFPChains

public static final void extractAFPChains(FatCatParameters params,
                                          AFPChain afpChain,
                                          Atom[] ca1,
                                          Atom[] ca2)
                                   throws StructureException

Throws:

StructureException

sortAfps

public static final void sortAfps(AFPChain afpChain,
                                  Atom[] ca1,
                                  Atom[] ca2)