Class AFPChainCoordManager
- java.lang.Object
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- org.biojava.nbio.structure.align.gui.aligpanel.AFPChainCoordManager
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public class AFPChainCoordManager extends Object
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Field Summary
Fields Modifier and Type Field Description static int
DEFAULT_CHAR_SIZE
size per characterstatic int
DEFAULT_LINE_LENGTH
number of chars per linestatic int
DEFAULT_LINE_SEPARATION
separation of line 1 and 2 in alignmentstatic int
DEFAULT_RIGHT_SPACER
Space on the right side between sequence and legend.static int
DEFAULT_X_SPACE
left boundarystatic int
DEFAULT_Y_SPACE
top boundarystatic int
DEFAULT_Y_STEP
size of space between rowsstatic int
SUMMARY_POS
Position at which the alignment summary is printed
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Constructor Summary
Constructors Constructor Description AFPChainCoordManager()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getAligSeq(Point point)
returns the AligSeq (0 or 1) for a point returns -1 if not over an alig seq.Point
getEndLegendPosition(int lineNr, int chainNr)
Point
getLegendPosition(int lineNr, int chainNr)
provide the coordinates for where to draw the legend for line X and if it is chain 1 or 2Point
getPanelPos(int aligSeq, int i)
get the position of the sequence position on the Panelint
getPreferredHeight()
Y coordinate sizeint
getPreferredWidth()
X coordinate sizeint
getSeqPos(int aligSeq, Point p)
Convert from a X position in the JPanel to alignment positionint
getSummaryPos()
void
setAFPChain(AFPChain afpChain)
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Field Detail
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DEFAULT_RIGHT_SPACER
public static final int DEFAULT_RIGHT_SPACER
Space on the right side between sequence and legend.- See Also:
- Constant Field Values
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DEFAULT_LINE_LENGTH
public static final int DEFAULT_LINE_LENGTH
number of chars per line- See Also:
- Constant Field Values
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DEFAULT_Y_STEP
public static final int DEFAULT_Y_STEP
size of space between rows- See Also:
- Constant Field Values
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DEFAULT_CHAR_SIZE
public static final int DEFAULT_CHAR_SIZE
size per character- See Also:
- Constant Field Values
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DEFAULT_LINE_SEPARATION
public static final int DEFAULT_LINE_SEPARATION
separation of line 1 and 2 in alignment- See Also:
- Constant Field Values
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DEFAULT_X_SPACE
public static final int DEFAULT_X_SPACE
left boundary- See Also:
- Constant Field Values
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DEFAULT_Y_SPACE
public static final int DEFAULT_Y_SPACE
top boundary- See Also:
- Constant Field Values
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SUMMARY_POS
public static final int SUMMARY_POS
Position at which the alignment summary is printed- See Also:
- Constant Field Values
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Constructor Detail
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AFPChainCoordManager
public AFPChainCoordManager()
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Method Detail
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getSummaryPos
public int getSummaryPos()
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getPreferredWidth
public int getPreferredWidth()
X coordinate size- Returns:
- the preferred width
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getPreferredHeight
public int getPreferredHeight()
Y coordinate size- Returns:
- the preferred height
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getSeqPos
public int getSeqPos(int aligSeq, Point p)
Convert from a X position in the JPanel to alignment position- Parameters:
aligSeq
- sequence 0 or 1p
- point on panel- Returns:
- the sequence position for a point on the Panel
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getPanelPos
public Point getPanelPos(int aligSeq, int i)
get the position of the sequence position on the Panel- Parameters:
aligSeq
- 0 or 1 for which of the two sequences to ask for.i
- sequence position- Returns:
- the point on a panel for a sequence position
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setAFPChain
public void setAFPChain(AFPChain afpChain)
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getAligSeq
public int getAligSeq(Point point)
returns the AligSeq (0 or 1) for a point returns -1 if not over an alig seq.- Parameters:
point
-- Returns:
- which of the two sequences a point on the panel corresponds to
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getLegendPosition
public Point getLegendPosition(int lineNr, int chainNr)
provide the coordinates for where to draw the legend for line X and if it is chain 1 or 2- Parameters:
lineNr
- which line is this forchainNr
- is it chain 0 or 1- Returns:
- get the point where to draw the legend
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getEndLegendPosition
public Point getEndLegendPosition(int lineNr, int chainNr)
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