Uses of Class
org.biojava.nbio.structure.align.xml.PdbPairsMessage

Packages that use PdbPairsMessage

Package	Description
org.biojava.nbio.structure.align.client	This package deals with the server communication for auto-downloading pre-calculated alignments.
org.biojava.nbio.structure.align.xml	Serialization and deserialization for structure alignment results (as AFPChain object) to XML.

Uses of PdbPairsMessage in org.biojava.nbio.structure.align.client

Methods in org.biojava.nbio.structure.align.client that return PdbPairsMessage

Modifier and Type	Method	Description
protected PdbPairsMessage	FarmJobRunnable.getAlignmentPairsFromServer()	talk to centralized server and fetch all alignments to run.
static PdbPairsMessage	JFatCatClient.getPdbPairs(String url, int nrPair, String username)

Uses of PdbPairsMessage in org.biojava.nbio.structure.align.xml

Methods in org.biojava.nbio.structure.align.xml that return PdbPairsMessage

Modifier and Type	Method	Description
static PdbPairsMessage	PdbPairXMLConverter.convertXMLtoPairs(String xml)