Uses of Interface
org.biojava.nbio.structure.AminoAcid
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Packages that use AminoAcid Package Description org.biojava.nbio.structure -
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Uses of AminoAcid in org.biojava.nbio.structure
Classes in org.biojava.nbio.structure that implement AminoAcid Modifier and Type Class Description class
AminoAcidImpl
AminoAcid inherits most from Hetatom.Methods in org.biojava.nbio.structure that return AminoAcid Modifier and Type Method Description static AminoAcid
StandardAminoAcid. getAminoAcid(String name)
get a standard amino acid.AminoAcid
Mutator. mutateResidue(AminoAcid oldAmino, String newType)
create a new residue which is of the new type.Methods in org.biojava.nbio.structure with parameters of type AminoAcid Modifier and Type Method Description static Atom
Calc. createVirtualCBAtom(AminoAcid amino)
creates a virtual C-beta atom. this might be needed when working with GLY thanks to Peter Lackner for a python template of this method.static double
Calc. getPhi(AminoAcid a, AminoAcid b)
Calculate the phi angle.static double
Calc. getPsi(AminoAcid a, AminoAcid b)
Calculate the psi angle.static boolean
Calc. isConnected(AminoAcid a, AminoAcid b)
Test if two amino acids are connected, i.e. if the distance from C to N < 2.5 Angstrom.AminoAcid
Mutator. mutateResidue(AminoAcid oldAmino, String newType)
create a new residue which is of the new type.
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