Uses of Class
org.biojava.nbio.structure.EntityInfo
-
Packages that use EntityInfo Package Description org.biojava.nbio.structure org.biojava.nbio.structure.contact org.biojava.nbio.structure.io Input and Output of Structures -
-
Uses of EntityInfo in org.biojava.nbio.structure
Methods in org.biojava.nbio.structure that return EntityInfo Modifier and Type Method Description EntityInfo
Structure. getCompoundById(int entityId)
Deprecated.useStructure.getEntityById(int)
insteadEntityInfo
StructureImpl. getCompoundById(int molId)
Request a particular entity by its entity id (mol id in legacy PDB format)EntityInfo
Structure. getEntityById(int entityId)
Request a particular entity by its entity id (mol id in legacy PDB format)EntityInfo
StructureImpl. getEntityById(int entityId)
Request a particular entity by its entity id (mol id in legacy PDB format)EntityInfo
Chain. getEntityInfo()
Returns the EntityInfo for this chain.EntityInfo
ChainImpl. getEntityInfo()
Returns the EntityInfo for this chain.Methods in org.biojava.nbio.structure that return types with arguments of type EntityInfo Modifier and Type Method Description List<EntityInfo>
Structure. getEntityInfos()
Get all the EntityInfo for this Structure.List<EntityInfo>
StructureImpl. getEntityInfos()
Get all the EntityInfo for this Structure.Methods in org.biojava.nbio.structure with parameters of type EntityInfo Modifier and Type Method Description void
Structure. addEntityInfo(EntityInfo entityInfo)
Add an EntityInfo to this Structurevoid
StructureImpl. addEntityInfo(EntityInfo entityInfo)
Add an EntityInfo to this Structurevoid
Chain. setEntityInfo(EntityInfo entityInfo)
Sets the Entity informationvoid
ChainImpl. setEntityInfo(EntityInfo mol)
Sets the Entity informationMethod parameters in org.biojava.nbio.structure with type arguments of type EntityInfo Modifier and Type Method Description void
Structure. setEntityInfos(List<EntityInfo> molList)
Set the EntityInfovoid
StructureImpl. setEntityInfos(List<EntityInfo> molList)
Set the EntityInfoConstructors in org.biojava.nbio.structure with parameters of type EntityInfo Constructor Description EntityInfo(EntityInfo c)
Constructs a new EntityInfo copying all data from the given one but not setting the Chains -
Uses of EntityInfo in org.biojava.nbio.structure.contact
Methods in org.biojava.nbio.structure.contact that return types with arguments of type EntityInfo Modifier and Type Method Description Pair<EntityInfo>
StructureInterface. getParentCompounds()
Finds the parent compounds by looking up the references of first atom of each side of this interface -
Uses of EntityInfo in org.biojava.nbio.structure.io
Methods in org.biojava.nbio.structure.io that return types with arguments of type EntityInfo Modifier and Type Method Description static List<EntityInfo>
EntityFinder. findPolyEntities(List<List<Chain>> polyModels)
Utility method that employs some heuristics to find theEntityInfo
s for the polymeric chains given in constructor.
-