Class GroupContactSet

    • Constructor Detail

      • GroupContactSet

        public GroupContactSet​(AtomContactSet atomContacts)
        Constructs a GroupContactSet by collapsing the given AtomContactSet into residue-residue (group-group) contacts.
        Parameters:
        atomContacts -
    • Method Detail

      • hasContact

        public boolean hasContact​(Group group1,
                                  Group group2)
        Tell whether the given group pair is a contact in this GroupContactSet, the comparison is done by matching residue numbers and chain identifiers
        Parameters:
        group1 -
        group2 -
        Returns:
      • hasContact

        public boolean hasContact​(ResidueNumber resNumber1,
                                  ResidueNumber resNumber2)
        Tell whether the given pair is a contact in this GroupContactSet, the comparison is done by matching residue numbers and chain identifiers
        Parameters:
        resNumber1 -
        resNumber2 -
        Returns:
      • hasContact

        public boolean hasContact​(org.biojava.nbio.structure.contact.ResidueIdentifier resId1,
                                  org.biojava.nbio.structure.contact.ResidueIdentifier resId2)
        Tell whether the given pair is a contact in this GroupContactSet, in a chain-identifier independent way: contacts happening between different copies of the same Compound(Entity) will be considered equal as long as they have the same residue numbers.
        Parameters:
        resId1 -
        resId2 -
        Returns:
      • getContact

        public GroupContact getContact​(Group group1,
                                       Group group2)
        Returns the corresponding GroupContact or null if no contact exists between the 2 given groups
        Parameters:
        group1 -
        group2 -
        Returns:
      • size

        public int size()