Uses of Class
org.biojava.nbio.structure.domain.pdp.PDPDistanceMatrix
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Packages that use PDPDistanceMatrix Package Description org.biojava.nbio.structure.domain.pdp -
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Uses of PDPDistanceMatrix in org.biojava.nbio.structure.domain.pdp
Methods in org.biojava.nbio.structure.domain.pdp that return PDPDistanceMatrix Modifier and Type Method Description PDPDistanceMatrix
GetDistanceMatrix. getDistanceMatrix(Atom[] protein)
A set of Calpha atoms that are representing the proteinMethods in org.biojava.nbio.structure.domain.pdp with parameters of type PDPDistanceMatrix Modifier and Type Method Description static List<Domain>
ClusterDomains. cluster(List<Domain> domains, PDPDistanceMatrix pdpDistMatrix)
int
Cut. cut(Atom[] ca, Domain dom, CutValues val, int[][] dist, PDPDistanceMatrix pdpMatrix)
void
CutDomain. cutDomain(Domain dom, CutSites cut_sites, PDPDistanceMatrix pdpMatrix)
Constructors in org.biojava.nbio.structure.domain.pdp with parameters of type PDPDistanceMatrix Constructor Description CutDomain(Atom[] ca, PDPDistanceMatrix pdpMatrix)
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