StructureIOFile (biojava 5.2.0 API)

All Superinterfaces:

StructureProvider

All Known Implementing Classes:

LocalPDBDirectory, MMCIFFileReader, MMTFFileReader, PDBFileReader
```
public interface StructureIOFile
extends StructureProvider
```
StructureIOFile extends StructureProvider with methods specific to parsing files from the filesystem.

Author:

Andreas Prlic

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`addExtension(String ext)`	Associates a file extension with this particular StructureIOFile, indicating that files of that type can be parsed.
`List<String>`	`getExtensions()`	Returns a list of extensions supported by this class
`Structure`	`getStructure(File file)`	Read file from File and returns a Structure object.
`Structure`	`getStructure(String filename)`	Open filename and return a Structure object.

Methods inherited from interface org.biojava.nbio.structure.io.StructureProvider
getFileParsingParameters, getStructureById, setFileParsingParameters

- Method Detail
  - addExtension
```
void addExtension(String ext)
```
    Associates a file extension with this particular StructureIOFile, indicating that files of that type can be parsed. This is generally called only in the constructor of the implementing class.
    
    Parameters:
    
    ext - a String ...
  - getExtensions
```
List<String> getExtensions()
```
    Returns a list of extensions supported by this class
    
    Returns:
    
    a (potentially empty) list of strings
  - getStructure
```
Structure getStructure(String filename)
                throws IOException
```
    Open filename and return a Structure object. Not to be confused with StructureProvider.getStructureById(String)
    
    Parameters:
    
    filename - The path to the file. Must be the correct format for the implementing class.
    
    Returns:
    
    a Structure object
    
    Throws:
    
    IOException - ...
  - getStructure
```
Structure getStructure(File file)
                throws IOException
```
    Read file from File and returns a Structure object.
    
    Parameters:
    
    file - file containing the structure. Must be the correct format for the implementing class
    
    Returns:
    
    a Structure object
    
    Throws:
    
    IOException - ...