ChemCompBond (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.structure.io.mmcif.model.ChemCompBond

All Implemented Interfaces:: Serializable

public class ChemCompBond
extends Object
implements Serializable

See Also:: Serialized Form

Constructor Summary

Constructors
Constructor Description

ChemCompBond()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`String`	`getAtom_id_1()`
`String`	`getAtom_id_2()`
`String`	`getComp_id()`
`int`	`getNumericalBondOrder()`	Converts this ChemCompBond's value_order attribute into an int using the conversion:
`String`	`getPdbx_aromatic_flag()`
`String`	`getPdbx_ordinal()`
`String`	`getPdbx_stereo_config()`
`String`	`getValue_order()`
`void`	`setAtom_id_1(String atom_id_1)`
`void`	`setAtom_id_2(String atom_id_2)`
`void`	`setComp_id(String comp_id)`
`void`	`setPdbx_aromatic_flag(String pdbx_aromatic_flag)`
`void`	`setPdbx_ordinal(String pdbx_ordinal)`
`void`	`setPdbx_stereo_config(String pdbx_stereo_config)`
`void`	`setValue_order(String value_order)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- ChemCompBond
```
public ChemCompBond()
```

Method Detail

getComp_id
```
public String getComp_id()
```

setComp_id

public void setComp_id(String comp_id)

getAtom_id_1
```
public String getAtom_id_1()
```

setAtom_id_1

public void setAtom_id_1(String atom_id_1)

getAtom_id_2
```
public String getAtom_id_2()
```

setAtom_id_2

public void setAtom_id_2(String atom_id_2)

getValue_order
```
public String getValue_order()
```

setValue_order

public void setValue_order(String value_order)

getPdbx_aromatic_flag
```
public String getPdbx_aromatic_flag()
```

setPdbx_aromatic_flag

public void setPdbx_aromatic_flag(String pdbx_aromatic_flag)

getPdbx_stereo_config
```
public String getPdbx_stereo_config()
```

setPdbx_stereo_config

public void setPdbx_stereo_config(String pdbx_stereo_config)

getPdbx_ordinal
```
public String getPdbx_ordinal()
```

setPdbx_ordinal

public void setPdbx_ordinal(String pdbx_ordinal)

getNumericalBondOrder
```
public int getNumericalBondOrder()
```
Converts this ChemCompBond's value_order attribute into an int using the conversion:
```
        SING -> 1
        DOUB -> 2
        TRIP -> 3
        QUAD -> 4
 
```
Any other values will return -1.
(Source: http://mmcif.rcsb.org/dictionaries/mmcif_mdb.dic/Items/_chem_comp_bond. value_order.html)
Returns:

the numerical value of this ChemCompBond's bond order, or -1 if the value is non-numeric or unknown.