Package org.biojava.nbio.structure.io.mmcif

Input and Output of mmcif files. See also the BioJava 3 tutorial for more information on mmCif parsing.

Interface Summary

Interface	Description
ChemCompProvider	Interface that is implemented by all classes that can provide ChemComp definitions.
MMcifConsumer	An interface for the events triggered by a MMcifParser.
MMcifParser	Interface that needs to be implemented by an MMcifParser

Class Summary

Class	Description
AllChemCompProvider	A ChemComp provider that downloads and caches the components.cif file from the wwPDB site.
ChemCompConsumer
ChemCompGroupFactory
ChemicalComponentDictionary	A representation of the Chemical Component Dictionary.
DownloadChemCompProvider	This provider of chemical components can download and cache chemical component definition files from the RCSB PDB web site.
MetalBondConsumer	Created by andreas on 6/9/16.
MetalBondParser	Created by andreas on 6/6/16.
MMCIFFileTools	Some tools for mmCIF file writing.
ReducedChemCompProvider	Unlike the DownloadChemCompProvider, this ChemCompProvider does not download any chem comp definitions.
SimpleMMcifConsumer	A MMcifConsumer implementation that builds an in-memory representation of the content of a mmcif file as a BioJava Structure object.
SimpleMMcifParser	A simple mmCif file parser Usage:
ZipChemCompProvider	This chemical component provider retrieves and caches chemical component definition files from a zip archive specified in its construction.