Package org.biojava.nbio.structure.rcsb
Class GetRepresentatives
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- org.biojava.nbio.structure.rcsb.GetRepresentatives
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public class GetRepresentatives extends Object
TODO Move this toRepresentatives
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Constructor Summary
Constructors Constructor Description GetRepresentatives()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static SortedSet<String>
getAll()
Returns the current list of all PDB IDs.static SortedSet<StructureName>
getRepresentatives(int sequenceIdentity)
Returns a representative set of PDB protein chains at the specified sequence identity cutoff.
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Constructor Detail
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GetRepresentatives
public GetRepresentatives()
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Method Detail
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getRepresentatives
public static SortedSet<StructureName> getRepresentatives(int sequenceIdentity)
Returns a representative set of PDB protein chains at the specified sequence identity cutoff. See http://www.pdb.org/pdb/statistics/clusterStatistics.do for more information.- Parameters:
sequenceIdentity
- sequence identity threshold- Returns:
- PdbChainKey set of representatives
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