Uses of Class
org.biojava.nbio.structure.scop.ScopDescription
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Packages that use ScopDescription Package Description org.biojava.nbio.structure.scop Parsers and API for SCOP, Structural Classification of Proteins.org.biojava.nbio.structure.scop.server -
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Uses of ScopDescription in org.biojava.nbio.structure.scop
Methods in org.biojava.nbio.structure.scop that return ScopDescription Modifier and Type Method Description ScopDescription
CachedRemoteScopInstallation. getScopDescriptionBySunid(int sunid)
ScopDescription
RemoteScopInstallation. getScopDescriptionBySunid(int sunid)
ScopDescription
ScopDatabase. getScopDescriptionBySunid(int sunid)
Return the SCOP description for a node in the hierarchy by its "sunid" id.ScopDescription
ScopInstallation. getScopDescriptionBySunid(int sunid)
Methods in org.biojava.nbio.structure.scop that return types with arguments of type ScopDescription Modifier and Type Method Description List<ScopDescription>
CachedRemoteScopInstallation. filterByClassificationId(String query)
List<ScopDescription>
RemoteScopInstallation. filterByClassificationId(String query)
List<ScopDescription>
ScopDatabase. filterByClassificationId(String query)
Get all scop descriptions that start with a classification ID, e.g. b.1.18List<ScopDescription>
ScopInstallation. filterByClassificationId(String query)
List<ScopDescription>
CachedRemoteScopInstallation. filterByDescription(String query)
List<ScopDescription>
RemoteScopInstallation. filterByDescription(String query)
List<ScopDescription>
ScopDatabase. filterByDescription(String query)
Get all scop descriptions that start with a certain name. e.g.List<ScopDescription>
ScopInstallation. filterByDescription(String query)
List<ScopDescription>
CachedRemoteScopInstallation. getByCategory(ScopCategory category)
List<ScopDescription>
RemoteScopInstallation. getByCategory(ScopCategory category)
List<ScopDescription>
ScopDatabase. getByCategory(ScopCategory category)
Get all records of a particular classification.List<ScopDescription>
ScopInstallation. getByCategory(ScopCategory category)
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Uses of ScopDescription in org.biojava.nbio.structure.scop.server
Methods in org.biojava.nbio.structure.scop.server that return ScopDescription Modifier and Type Method Description static ScopDescription
XMLUtil. getScopDescriptionFromXML(String xml)
Methods in org.biojava.nbio.structure.scop.server that return types with arguments of type ScopDescription Modifier and Type Method Description List<ScopDescription>
ScopDescriptions. getScopDescription()
Methods in org.biojava.nbio.structure.scop.server with parameters of type ScopDescription Modifier and Type Method Description static String
XMLUtil. getScopDescriptionXML(ScopDescription desc)
Method parameters in org.biojava.nbio.structure.scop.server with type arguments of type ScopDescription Modifier and Type Method Description static String
XMLUtil. getScopDescriptionsXML(List<ScopDescription> descriptions)
void
ScopDescriptions. setScopDescription(List<ScopDescription> descriptions)
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