SecStrucTools (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.structure.secstruc.SecStrucTools

```
public class SecStrucTools
extends Object
```
This class contains methods for obtaining and converting secondary structure information from BioJava Structures.

Since:

4.1.1

Author:

Aleix Lafita

Constructor Summary

Constructors
Constructor Description

SecStrucTools()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static void`	`assignSecStruc(Structure s, List<SecStrucInfo> listSSI)`
`static List<SecStrucElement>`	`getSecStrucElements(List<Group> groups)`	Obtain the List of secondary structure elements (SecStrucElement) of a List of Groups (assumed to be sequential, this is, connected in the original Structure).
`static List<SecStrucElement>`	`getSecStrucElements(Structure s)`	Obtain the List of secondary structure elements (SecStrucElement) of a Structure.
`static List<SecStrucInfo>`	`getSecStrucInfo(Structure s)`	Obtain the List of secondary structure information (SecStrucInfo) of a Structure.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - SecStrucTools
```
public SecStrucTools()
```
- Method Detail
  - getSecStrucInfo
```
public static List<SecStrucInfo> getSecStrucInfo(Structure s)
```
    Obtain the List of secondary structure information (SecStrucInfo) of a Structure.
    
    Parameters:
    
    s - Structure with SS assignments
    
    Returns:
    
    List of SecStrucInfo objects
  - assignSecStruc
```
public static void assignSecStruc(Structure s,
                                  List<SecStrucInfo> listSSI)
```
  - getSecStrucElements
```
public static List<SecStrucElement> getSecStrucElements(Structure s)
```
    Obtain the List of secondary structure elements (SecStrucElement) of a Structure.
    
    Parameters:
    
    s - Structure with SS assignments
    
    Returns:
    
    List of SecStrucElement objects
  - getSecStrucElements
```
public static List<SecStrucElement> getSecStrucElements(List<Group> groups)
```
    Obtain the List of secondary structure elements (SecStrucElement) of a List of Groups (assumed to be sequential, this is, connected in the original Structure).
    
    Parameters:
    
    groups - Structure with SS assignments
    
    Returns:
    
    List of SecStrucElement objects