List<SecStrucState> |
SecStrucCalc.calculate(Structure s,
boolean assign) |
Predicts the secondary structure of this Structure object,
using a DSSP implementation.
|
static List<SecStrucState> |
DSSPParser.fetch(String pdb,
Structure structure,
boolean assign) |
Fetch and parse the DSSP file of the specified pdb code
from the PDB web server and return the secondary structure
annotation as a List of SecStrucState objects. |
static List<SecStrucState> |
DSSPParser.parseFile(String dsspPath,
Structure structure,
boolean assign) |
Parse a DSSP output file and return the secondary structure
annotation as a List of SecStrucState objects. |
static List<SecStrucState> |
DSSPParser.parseInputStream(InputStream dsspIs,
Structure structure,
boolean assign) |
Parse a DSSP output file and return the secondary structure
annotation as a List of SecStrucState objects. |
static List<SecStrucState> |
DSSPParser.parseString(String dsspOut,
Structure structure,
boolean assign) |
Parse a DSSP format String and return the secondary structure
annotation as a List of SecStrucState objects. |