HelixLayers (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.structure.symmetry.core.HelixLayers

```
public class HelixLayers
extends Object
```
Author:

Peter

Constructor Summary

Constructors
Constructor Description

HelixLayers()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addHelix(Helix helix)`
`void`	`clear()`
`Helix`	`getByLargestContacts()`
`Helix`	`getByLargestContactsNotLowestAngle()`
`Helix`	`getByLowestAngle()`
`Helix`	`getHelix(int index)`
`QuatSymmetryScores`	`getScores()`	Returns QuatSymmetryScores averaged over all rotations (except the first rotation, which is the unit operation E)
`void`	`setSymmetryDeviation(double symmetryDeviation)`
`int`	`size()`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail
- HelixLayers
```
public HelixLayers()
```

Method Detail

size
```
public int size()
```

addHelix
```
public void addHelix(Helix helix)
```

getHelix
```
public Helix getHelix(int index)
```

getByLowestAngle
```
public Helix getByLowestAngle()
```

getByLargestContacts
```
public Helix getByLargestContacts()
```

getByLargestContactsNotLowestAngle

public Helix getByLargestContactsNotLowestAngle()

getScores
```
public QuatSymmetryScores getScores()
```
Returns QuatSymmetryScores averaged over all rotations (except the first rotation, which is the unit operation E)

Returns:

mean scores average over rotations

setSymmetryDeviation
```
public void setSymmetryDeviation(double symmetryDeviation)
```
Parameters:

symmetryDeviation - the symmetryDeviation to set

clear
```
public void clear()
```

toString
```
public String toString()
```
Overrides:

toString in class Object