QuatSuperpositionScorer (biojava 5.2.0 API)

java.lang.Object
- org.biojava.nbio.structure.symmetry.core.QuatSuperpositionScorer

public class QuatSuperpositionScorer
extends Object

Author:: Peter

Constructor Summary

Constructors
Constructor Description

QuatSuperpositionScorer()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static QuatSymmetryScores`	`calcScores(QuatSymmetrySubunits subunits, javax.vecmath.Matrix4d transformation, List<Integer> permutation)`	Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - QuatSuperpositionScorer
```
public QuatSuperpositionScorer()
```
- Method Detail
  - calcScores
```
public static QuatSymmetryScores calcScores(QuatSymmetrySubunits subunits,
                                            javax.vecmath.Matrix4d transformation,
                                            List<Integer> permutation)
```
    Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)
    
    Parameters:
    
    subunits - subunits to be scored
    
    transformation - transformation matrix
    
    permutations - permutation that determines which subunits are superposed
    
    Returns: