Package org.biojava.nbio.structure.symmetry.core

Class Rotation

java.lang.Object

org.biojava.nbio.structure.symmetry.core.Rotation

public class Rotation
extends Object

Author:

Peter

Constructor Summary

Constructors

Constructor	Description
Rotation()

Method Summary

Modifier and Type	Method	Description
javax.vecmath.AxisAngle4d	getAxisAngle()
int	getDirection()
int	getFold()
int	getNStart()	Returns the number of starts if this rotation represents a helical rotation
List<Integer>	getPermutation()
QuatSymmetryScores	getScores()
double	getSubunitRmsd()
double	getTraceRmsd()
double	getTraceTmScoreMin()
javax.vecmath.Matrix4d	getTransformation()
void	setAxisAngle(javax.vecmath.AxisAngle4d axisAngle)
void	setDirection(int axis)
void	setFold(int fold)
void	setPermutation(List<Integer> permutation)
void	setScores(QuatSymmetryScores scores)
void	setSubunitRmsd(double subunitRmsd)
void	setTraceRmsd(double traceRmsd)
void	setTraceTmScoreMin(double traceTmScoreMin)
void	setTransformation(javax.vecmath.Matrix4d transformation)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Rotation

public Rotation()

Method Detail

getSubunitRmsd

public double getSubunitRmsd()

Returns:

the subunitRmsd

setSubunitRmsd

public void setSubunitRmsd(double subunitRmsd)

Parameters:

subunitRmsd - the subunitRmsd to set

getTraceRmsd

public double getTraceRmsd()

Returns:

the traceRmsd

setTraceRmsd

public void setTraceRmsd(double traceRmsd)

Parameters:

traceRmsd - the traceRmsd to set

setTraceTmScoreMin

public void setTraceTmScoreMin(double traceTmScoreMin)

Parameters:

traceTmScoreMin - the traceTmScore to set

getTraceTmScoreMin

public double getTraceTmScoreMin()

Returns:

the traceTmScoreMin

getPermutation

public List<Integer> getPermutation()

Returns:

the permutation

setPermutation

public void setPermutation(List<Integer> permutation)

Parameters:

permutation - the permutation to set

getTransformation

public javax.vecmath.Matrix4d getTransformation()

Returns:

the transformation

setTransformation

public void setTransformation(javax.vecmath.Matrix4d transformation)

Parameters:

transformation - the transformation to set

getFold

public int getFold()

Returns:

the fold

setFold

public void setFold(int fold)

Parameters:

fold - the fold to set

getScores

public QuatSymmetryScores getScores()

Returns:

the scores

setScores

public void setScores(QuatSymmetryScores scores)

Parameters:

scores - the scores to set

getDirection

public int getDirection()

Returns:

the direction

setDirection

public void setDirection(int axis)

Parameters:

direction - the direction to set

getAxisAngle

public javax.vecmath.AxisAngle4d getAxisAngle()

Returns:

the axisAngle

setAxisAngle

public void setAxisAngle(javax.vecmath.AxisAngle4d axisAngle)

Parameters:

axisAngle - the axisAngle to set

getNStart

public int getNStart()

Returns the number of starts if this rotation represents a helical rotation

toString

public String toString()

Overrides:

toString in class Object