Class BlastClustReader
- java.lang.Object
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- org.biojava.nbio.structure.symmetry.utils.BlastClustReader
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- All Implemented Interfaces:
Serializable
public class BlastClustReader extends Object implements Serializable
- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description BlastClustReader(int sequenceIdentity)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description List<List<String>>
getChainIdsInEntry(String pdbId)
List<List<String>>
getPdbChainIdClusters()
List<List<String>>
getPdbChainIdClusters(String pdbId)
String
getRepresentativeChain(String pdbId, String chainId)
Map<String,String>
getRepresentatives(String pdbId)
int
indexOf(String pdbId, String chainId)
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Constructor Detail
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BlastClustReader
public BlastClustReader(int sequenceIdentity)
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Method Detail
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getPdbChainIdClusters
public List<List<String>> getPdbChainIdClusters()
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getRepresentatives
public Map<String,String> getRepresentatives(String pdbId)
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getRepresentativeChain
public String getRepresentativeChain(String pdbId, String chainId)
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getPdbChainIdClusters
public List<List<String>> getPdbChainIdClusters(String pdbId)
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getChainIdsInEntry
public List<List<String>> getChainIdsInEntry(String pdbId)
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