Uses of Class
org.biojava.nbio.survival.cox.CoxInfo
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Packages that use CoxInfo Package Description org.biojava.nbio.survival.cox org.biojava.nbio.survival.cox.stats org.biojava.nbio.survival.kaplanmeier.figure -
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Uses of CoxInfo in org.biojava.nbio.survival.cox
Methods in org.biojava.nbio.survival.cox that return CoxInfo Modifier and Type Method Description CoxInfo
CoxVariables. getCoxInfo(String name)
static CoxInfo
CoxHelper. process(String datafile, String timeColumn, String statusColumn, String weightColumn, String strataColumn, String clusterColumn, ArrayList<String> variables, boolean useStrata, boolean useWeights)
static CoxInfo
CoxHelper. process(WorkSheet worksheet, String timeColumn, String statusColumn, String weightColumn, String strataColumn, String clusterColumn, ArrayList<String> variables, boolean useStrata, boolean useWeights)
CoxInfo
CoxR. process(ArrayList<String> variables, ArrayList<SurvivalInfo> DataT, boolean useStrata, boolean useWeighted, boolean robust, boolean cluster)
CoxInfo
CoxR. process(ArrayList<String> variables, ArrayList<SurvivalInfo> data, int maxiter, CoxMethod method, double eps, double toler, double[] beta, int doscale, boolean useStrata, boolean useWeighted, boolean robust, boolean cluster)
Methods in org.biojava.nbio.survival.cox that return types with arguments of type CoxInfo Modifier and Type Method Description LinkedHashMap<String,CoxInfo>
CoxVariables. getCoxInfoHashMap()
Methods in org.biojava.nbio.survival.cox with parameters of type CoxInfo Modifier and Type Method Description static void
CoxR. calculateWaldTestInfo(CoxInfo ci)
void
CoxR. coxphfitSCleanup(CoxInfo ci, boolean useWeighted, boolean robust, ArrayList<String> cluster)
static void
CoxCC. process(CoxInfo ci)
static double[][]
CoxScore. process(CoxMethod method, ArrayList<SurvivalInfo> survivalInfoList, CoxInfo coxInfo, boolean useStrata)
static double[][]
ResidualsCoxph. process(CoxInfo ci, ResidualsCoxph.Type type, boolean useWeighted, ArrayList<String> cluster)
void
CoxVariables. putCoxInfo(String name, CoxInfo coxInfo)
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Uses of CoxInfo in org.biojava.nbio.survival.cox.stats
Methods in org.biojava.nbio.survival.cox.stats with parameters of type CoxInfo Modifier and Type Method Description static double[][]
AgScore. process(CoxMethod method, ArrayList<SurvivalInfo> survivalInfoList, CoxInfo coxInfo, boolean useStrata)
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Uses of CoxInfo in org.biojava.nbio.survival.kaplanmeier.figure
Methods in org.biojava.nbio.survival.kaplanmeier.figure with parameters of type CoxInfo Modifier and Type Method Description void
KaplanMeierFigure. setCoxInfo(ArrayList<String> title, CoxInfo ci, String strataVariable, LinkedHashMap<String,String> legendMap, Boolean useWeighted)
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