Package org.biojava.nbio.ws.alignment
Interface RemotePairwiseAlignmentOutputProperties
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- All Superinterfaces:
Serializable
- All Known Implementing Classes:
NCBIQBlastOutputProperties
public interface RemotePairwiseAlignmentOutputProperties extends Serializable
RemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object.- Since:
- Biojava 3
- Author:
- Sylvain Foisy, Diploide BioIT
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Field Summary
Fields Modifier and Type Field Description static long
serialVersionUID
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description String
getOutputOption(String key)
Method that returns the value associated with the key given in parameter.Set<String>
getOutputOptions()
Method to get all keys to the information stored in this object.void
setOutputOption(String key, String val)
Method to set the value for a specific output parameter using a key to store in a map.
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Field Detail
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serialVersionUID
static final long serialVersionUID
- See Also:
- Constant Field Values
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Method Detail
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getOutputOption
String getOutputOption(String key) throws Exception
Method that returns the value associated with the key given in parameter.- Parameters:
key
- :a String with the required key for this map.- Returns:
- a String with the value associated with this key
- Throws:
Exception
- if key is not in the map of output options.
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setOutputOption
void setOutputOption(String key, String val)
Method to set the value for a specific output parameter using a key to store in a map.- Parameters:
key
- :the key use to designate the value to be storedval
- :the actual value matched to key
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getOutputOptions
Set<String> getOutputOptions()
Method to get all keys to the information stored in this object.- Returns:
- a
Set
with all keys held in this instance of the object
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