001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 * Created on DATE 021 * 022 */ 023 024package org.biojava.nbio.core.sequence; 025 026 027 028 029/** 030 * 031 * @author Scooter Willis 032 */ 033public class IntronSequence extends DNASequence{ 034 035 036 /** 037 * Place holder for Intron sequence features 038 * @param parentGeneSequence 039 * @param begin 040 * @param end 041 */ 042 043 public IntronSequence(GeneSequence parentGeneSequence, int begin, int end){ 044 this.setParentSequence(parentGeneSequence); 045 setBioBegin(begin); 046 setBioEnd(end); 047 048 } 049 050 @Override 051 public int getLength() { 052 return Math.abs(this.getBioEnd() - this.getBioBegin()) + 1; 053 } 054 055}