001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 * Created on Jan 24, 2008 021 * 022 */ 023 024package org.biojava.nbio.ontology; 025 026import java.util.Comparator; 027 028 029public class Synonym implements Comparable<Synonym>{ 030 031 032 public final static int UNKNOWN_SCOPE = -1; 033 public final static int RELATED_SYNONYM = 0; 034 public final static int EXACT_SYNONYM = 1; 035 public final static int NARROW_SYNONYM = 2; 036 public final static int BROAD_SYNONYM = 3; 037 038 int scope; 039 String category; 040 String name; 041 042 @Override 043 public String toString(){ 044 String txt = "Synonym: name:"+name+ " category:" + category + " scope: " +scope; 045 return txt; 046 } 047 048 public final static Comparator<Synonym> COMPARATOR = new Comparator<Synonym>() { 049 @Override 050 public int compare(Synonym a, Synonym b) { 051 if (a == null && b == null) 052 return 0; 053 else if (a == null) 054 return -1; 055 else if (b == null) 056 return 1; 057 else { 058 if ((a.getCategory() == null) && (b.getCategory() == null)) 059 return 0; 060 else if ( a.getCategory()==null) 061 return -1; 062 else if ( b.getCategory()==null) 063 return 1; 064 065 return a.getCategory().compareToIgnoreCase( 066 b.getCategory()); 067 } 068 } 069 }; 070 071 public Synonym() { 072 } 073 public String getName() { 074 return name; 075 } 076 public void setName(String name) { 077 this.name = name; 078 } 079 public String getCategory() { 080 return category; 081 } 082 public void setCategory(String category) { 083 this.category = category; 084 } 085 public int getScope() { 086 return scope; 087 } 088 public void setScope(int scope) { 089 this.scope = scope; 090 } 091 @Override 092 public int compareTo(Synonym o) { 093 return COMPARATOR.compare(this, o); 094 } 095}