001/*
002 *                  BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 * Created on Mar 1, 2006
021 *
022 */
023package org.biojava.nbio.structure.align.helper;
024
025public class AligMatEl
026extends IndexPair{
027
028
029
030                /**
031         *
032         */
033        private static final long serialVersionUID = -4040926588803887471L;
034                int value;
035                int contig;
036
037
038                public AligMatEl(){
039                        super();
040                        value  = -1;
041                        contig = -1;
042                }
043
044                public int getContig() {
045                        return contig;
046                }
047                public void setContig(int contig) {
048                        this.contig = contig;
049                }
050
051                public int getValue() {
052                        return value;
053                }
054                public void setValue(int value) {
055                        this.value = value;
056                }
057
058                @Override
059                public String toString(){
060                        String ret = "AligMatEl val:" + value + " contig:" + contig +
061                        " trackrow:" + getRow() + " trackcol:" + getCol();
062                        return ret;
063                }
064
065        }
066
067
068
069