001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 * Author: Daniel Asarnow 021 * Date: 2012-7-23 022 */ 023 024package org.biojava.nbio.structure.cath; 025 026import java.io.Serializable; 027 028/** 029 * @author Daniel Asarnow 030 */ 031public class CathFragment implements Serializable{ 032 033 public static final long serialVersionUID = 1L; 034 035 /** 036 * The number of this segment within the domain. 037 */ 038 Integer fragmentId; 039 040 /** 041 * The first residue in the segment. 042 * Refers to the complete residue specification (sequence number AND insertion code). 043 */ 044 String start; 045 046 /** 047 * The last residue in the segment. 048 * Refers to the complete residue specification (sequence number AND insertion code). 049 */ 050 String stop; 051 052 /** 053 * Number of residues in the segment. This value is parsed, not calculated. 054 */ 055 Integer length; 056 057 public Integer getFragmentId() { 058 return fragmentId; 059 } 060 061 public void setFragmentId(Integer fragmentId) { 062 this.fragmentId = fragmentId; 063 } 064 065 public String getStart() { 066 return start; 067 } 068 069 public void setStart(String start) { 070 this.start = start; 071 } 072 073 public String getStop() { 074 return stop; 075 } 076 077 public void setStop(String stop) { 078 this.stop = stop; 079 } 080 081 public Integer getLength() { 082 return length; 083 } 084 085 public void setLength(Integer length) { 086 this.length = length; 087 } 088}